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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

we're hiring: https://alleninstitute.org/careers/

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 43 13

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 22

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 28 14

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ComputationalReviewTemplate ComputationalReviewTemplate Public template

    A repository to start computational reviews with AI

    JavaScript 13 3

Repositories

Showing 10 of 729 repositories
  • zephyr-manuscript Public
    AllenNeuralDynamics/zephyr-manuscript's past year of commit activity
    Python 0 MIT 0 0 1 Updated Nov 10, 2026
  • AutoTomeQC Public

    Automates sectioning quality control for the Prototome/Pylasso. Analyzes block face images to grade cuts (Go/No-Go/Unsure) based on knife marks, splits, thickness, etc.

    AllenNeuralDynamics/AutoTomeQC's past year of commit activity
    Python 0 MIT 0 4 5 Updated Nov 9, 2026
  • aind-software-docs Public

    Centralized documentation repository for Scientific Computing, publishes to RTD

    AllenNeuralDynamics/aind-software-docs's past year of commit activity
    JavaScript 1 MIT 0 40 12 Updated Nov 9, 2026
  • openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    AllenNeuralDynamics/openscope-community-predictive-processing's past year of commit activity
    Python 28 MIT 14 32 3 Updated Nov 9, 2026
  • aind-dynamic-foraging-bfm-wrapper Public

    Job wrapper for Dynamic Foraging Behavior Foundation Model project

    AllenNeuralDynamics/aind-dynamic-foraging-bfm-wrapper's past year of commit activity
    Python 0 MIT 1 10 1 Updated Nov 9, 2026
  • nmcp-client Public
    AllenNeuralDynamics/nmcp-client's past year of commit activity
    TypeScript 0 0 10 0 Updated Nov 9, 2026
  • dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    AllenNeuralDynamics/dynamic-foraging-task's past year of commit activity
    Python 7 MIT 7 2 0 Updated Nov 9, 2026
  • aind-metadata-service Public

    REST API to compile metadata from various databases

    AllenNeuralDynamics/aind-metadata-service's past year of commit activity
    Python 3 MIT 0 9 0 Updated Nov 9, 2026
  • aind-pophys-pipeline Public

    2P planar optical physiology processing pipeline

    AllenNeuralDynamics/aind-pophys-pipeline's past year of commit activity
    Nextflow 0 MIT 0 5 0 Updated Nov 9, 2026
  • nmcp-precomputed Public

    NMCP precomputed worker/service.

    AllenNeuralDynamics/nmcp-precomputed's past year of commit activity
    Python 0 0 2 0 Updated Nov 9, 2026
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