COMBINE lab

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1. salmon salmon Public

   🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

   Rust 939 191

2. alevin-fry alevin-fry Public

   🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

   Rust 219 24

3. oarfish oarfish Public

   long read RNA-seq quantification

   Rust 127 8

4. pufferfish pufferfish Public

   An efficient index for the colored, compacted, de Bruijn graph

   C 113 22

5. cuttlefish cuttlefish Public

   Building the compacted de Bruijn graph efficiently from references or reads.

   Rust 100 14

6. RapMap RapMap Public

   Rapid sensitive and accurate read mapping via quasi-mapping

   C++ 90 23