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@jbloomlab

jbloomlab

Jesse Bloom's lab GitHub account

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  1. phydms phydms Public

    phylogenetic analyses informed by deep mutational scanning data

    HTML 15 6

  2. dms_tools2 dms_tools2 Public

    software for the analysis and visualization of deep mutational scanning data

    Python 34 20

  3. dmslogo dmslogo Public

    draw sequence logos tailored to deep mutational scanning (DMS) data

    Jupyter Notebook 12 1

  4. neutcurve neutcurve Public

    Fit and plot neutralization curves

    Jupyter Notebook 9 5

Repositories

Showing 10 of 154 repositories
  • flu-seqneut-2026 Public

    Near real-time data on the human neutralizing antibody landscape to influenza virus as of the summer of 2026 to inform vaccine-strain selection

    jbloomlab/flu-seqneut-2026's past year of commit activity
    Python 2 MIT 0 0 0 Updated Nov 5, 2026
  • bloomlab-coding-standards Public

    standards for coding using agentic AI (tailed for Claude Code)

    jbloomlab/bloomlab-coding-standards's past year of commit activity
    1 0 0 0 Updated Nov 2, 2026
  • seqneut-pipeline Public

    Pipeline for analyzing sequencing-based neutralization assays

    jbloomlab/seqneut-pipeline's past year of commit activity
    Python 3 MIT 2 3 0 Updated Oct 31, 2026
  • tree-annotated-plot Public

    Annotate the axis of an Altair / Vega-Lite plot with a phylogenetic tree.

    jbloomlab/tree-annotated-plot's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 30, 2026
  • jbloomlab.github.io Public

    A website for the Bloom lab

    jbloomlab/jbloomlab.github.io's past year of commit activity
    Vue 1 0 0 0 Updated Oct 23, 2026
  • nextstrain-prot-titers-tree Public

    Build interactive `nextstrain` trees on protein sequences designed to display neutralization titer values

    jbloomlab/nextstrain-prot-titers-tree's past year of commit activity
    Python 0 MIT 2 1 0 Updated Oct 16, 2026
  • neutcurve Public

    Fit and plot neutralization curves

    jbloomlab/neutcurve's past year of commit activity
    Jupyter Notebook 9 GPL-3.0 5 0 0 Updated Oct 1, 2026
  • flu-seqneut-2026to2027 Public
    jbloomlab/flu-seqneut-2026to2027's past year of commit activity
    0 0 0 0 Updated Sep 18, 2026
  • prot-struct-viz Public

    Configurable interactive views of protein structures

    jbloomlab/prot-struct-viz's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 2, 2026
  • gga_codon_muts_oligo_design Public

    Design oligos for Golden-Gate assembly mutagenesis

    jbloomlab/gga_codon_muts_oligo_design's past year of commit activity
    Python 0 MIT 1 0 0 Updated Sep 1, 2026
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