Issues

• Eliminate fake read groups

  vgteam/vg_wdl#176 · Filter by author adamnovak opened on Jun 9, 2026

• Feature Request: giraffe mapping of CRAMs with multiple RGs

  vgteam/vg_wdl#151 · Filter by author jjfarrell opened on Jan 28, 2025
  1

• Old Docker images incompatible with Singularity v4.0.3

  vgteam/vg_wdl#147 · Filter by author stxue1 opened on Feb 3, 2024
  2

• giraffe.wdl run failed with "ERROR task indexReference"

  vgteam/vg_wdl#146 · Filter by author gsc74 opened on Jan 24, 2024

• Question about pangenome files

  vgteam/vg_wdl#142 · Filter by author mariyeta opened on Jun 5, 2023

• Reporting slowness of local miniwdl run

  vgteam/vg_wdl#140 · Filter by author pichuan opened on Mar 30, 2023

• Synchronize indexes with vg autoindex, or provide an indexing WDL

  vgteam/vg_wdl#139 · Filter by author adamnovak opened on Nov 21, 2022

• repo-wide WDL conventions

  vgteam/vg_wdl#12 · Filter by author mlin opened on Mar 25, 2019
  3

  

• CI connecting vg_construct_and_index and vg_multicall

  vgteam/vg_wdl#10 · Filter by author mlin opened on Mar 25, 2019
  3

  

• Example WGS VG workflow not compatible with wdl version 1.0

  vgteam/vg_wdl#6 · Filter by author cmarkello opened on Mar 1, 2019
  1

  

• WDL requires Docker images on dockerhub

  vgteam/vg_wdl#1 · Filter by author edawson opened on Jan 30, 2019
  9